Malachy’s paper is published in Cell Patterns
Malachy worked for two years on how to use computer vision to determine mouse mass. We are really proud of his accomplishment! Gautam and Brian both were critical in his success. We look forward to all that Malachy will accomplish. Paper link...
Strain Survey Open Field Video Dataset made public!
We have released our Strain Survey Open Field video dataset to the public over on harvard dataverse here: https://doi.org/10.7910/DVN/SAPNJG What this release includes: 2509 55-minute open field assay experiments across 62 inbred and F1 hybrid strains 2509 pose files...
Dataset for “Stride-level analysis of mouse open field behavior using deep learning-based pose estimation”
All of our data files are available for download from zenodo under the DOI 10.5281/zenodo.5636430. This release contains data files for our publication: "Stride-level analysis of mouse open field behavior using deep learning-based pose estimation". Also note that our...
Grooming Behavioral Data
Mouse Grooming Behavior Data Neural Network Annotated Training Data All training data is contained within a single HDF5 file. This format is similar to having individual files (called datasets) inside folders (called groups). Interaction with this data is easiest...
Machine learning-based automated phenotyping of inflammatory nocifensive behavior in mice
Images, labels, models and code are provided at ftp://ftp.jax.org/wottoj for the DeeplabCut model and GentleBoost classifier. Read_me document describes each file. Files included DeepLabCut Model Zipped file containing the images used to train DeepLabCut and the...
Pre-trained Single Mouse Tracking Neural Network Models
Neural Network Pre-trained Models Here, we're releasing some pre-trained neural network models. These models are trained on different subsets of our single mouse tracking training data found here. The code used to train the models as well as to run inferences is...
Single Mouse Tracking Annotated Dataset
Single Mouse Tracking Annotated Dataset Description of Data Information for each dataset falls into 3 folders. Filenames portray the dataset split used in the paper that they belong to (eg Training_1.png or Validation_1.png). Ref/*.png: Input image (image before...